| Year | Team Champion | Individual Champion | Scorre | |
| 1950 | Westchester | Zannett | Westchester | 79 |
| 1951 | ||||
| 1952 | ||||
| 1953 | Farmingdale | Wheeler | Alfred ATC | 78 |
| 1954 | Alfred ATC | Wheeler | Alfred ATC | 79 |
| 1955 | Hershey JC | LiVecchi | Alfred ATC | 82 |
| 1956 | Alfred ATC | Farrigan | Cobleskill | 78 |
| 1957 | Erie CC | Fettman | New York City CC | 75 |
| 1958 | Hershey JC | Ziegler | Hershey JC | 73 |
| 1959 | Broome CC | Sisolak | Broome CC | 79 |
| 1960 | Broome CC/Paul Smith's | Calvin | Paul Smith's | 74 |
| 1961 | Hershey JC | Horst | Hershey JC | 79 |
| 1962 | Paul Smith's | Bayus | Auburn CC | 74 |
| 1963 | Auburn CC | Bayus | Auburn CC | 71 |
| 1964 | Aubrun CC | Millard | Auburn CC | 70 |
| 1965 | Leicester JC | Castrilli | Corning CC | 72 |
| 1966 | Hudson Valley CC | Ferry | Monroe CC | 72 |
| 1967 | Hudson Valley CC | Ogden | Hudson Valley CC | 72 |
| 1968 | Niagara CCC | Dauphinee | Leicester | 77 |
| 1969 | Mohawk Valley CC | Armburst | Mohawk Valley CC | 73 |
| 1970 | Mohawk Valley CC | Loop | Jamestown CC | 76 |
| 1971 | Johnson & Wales | Dubiel | Mohawk Valley CC | 148 |
| 1972 | Mohawk Valley CC | Jones | Jefferson CC | 149 |
| 1973 | Mohawk Valley CC | Street | Dean | 146 |
| 1974 | Mohawk Valley CC | Gauthier | Auburn CC | 150 |
| 1975 | Hudson Valley CC | DiDomenico | Hudson Valley CC | 149 |
| 1976 | Monroe CC | Lane | Broome CC | 147 |
| 1977 | Cayga CC | Hyde | Cayuga CC | 144 |
| 1978 | Monroe CC | Herrington | Hudson Valley CC | 156 |
| 1979 | Hudson Valley CC | Stupa | Niagara CCC | 158 |
| 1980 | Monroe CC | Hubbs | Hudson Valley CC | 154 |
| 1981 | Broome CC | Kaspryzk | Mohawk Valley CC | 155 |
| 1982 | Broome CC | Roach | Broome CC | 155 |
| 1983 | Hudson Valley CC | Royak | Hudson Valley CC | 160 |
| 1984 | Broome CC | Butler | Hudson Valley CC | 156 |
| 1985 | Broome CC | Herceg | Broome CC | 152 |
| 1986 | Broome CC | Walewski | Mohawk Valley CC | 158 |
| 1987 | Mohawk Valley CC | Dyer | Broome CC | 157 |
| 1988 | Mohawk Valley CC | Roman | Mohawk Valley CC | 154 |
| 1989 | Broome CC | Deuel | Broome CC | 150 |
| 1990 | Mohawk Valley CC | Grabinski | Mohawk Valley CC | 146 |
| 1991 | Broome CC | Woods | Broome CC | 151 |
| 1992 | Broome CC | Alsheimer | Mohawk Valley CC | 153 |
| 1993 | Monroe CC | Capuzzo | Niagara CCC | 150 |
| 1994 | Monroe CC | Delmedico | Mohawk Valley CC | 146 |
| 1995 | Monroe CC | |||
| 1996 | Monroe CC | Josh Harrington | Jamestown CC | 155 |
| 1997 | Cobleskill | Brandon Haase | Cobleskill | 155 |
| 1998 | Monroe CC | Adam Singer | Jamestown CC | 149 |
| 1999 | ||||
| 2000 | Broome CC | Coln Thompson | Broome CC | 152 |
| 2001 | Jamestown CC | John Van Riper | 148 | |
| 2002 | Monroe CC | Cormack Cantwell | Monroe CC | 72 |
| 2003 | Cobleskill | Todd Cziepel | Cobleskill | 151 |
| 2004 | Monroe CC | Scott Harris | Monroe CC | 143 |
| 2005 | Monroe CC | Scott Harris | Monroe CC | 147 |
| 2006 | Monroe CC | Clint Chaffee | Tompkins Cortland CC | 146 |
| 2007 | Tompkins Cortland CC | Nick Chernega | Broome CC | 156 |
| 2008 | Tompkins Cortland CC | Kris Boyes | Tompkins Cortland CC | 157 |
| 2009 | Monroe CC | Tyler Phillips | Monroe CC | 146 |
| 2010 | Monroe CC | Kyle Harman | Erie CC | 157 |
| 2011 | Monroe CC | Shane Doesh | Monroe CC | 148 |
| 2012 | Monroe CC | Shan Dobesh | Monroe CC | 145 |
| 2013 | Monroe CC | Chadd Call | Jefferson CC | 148 |
| 2014 | Monroe CC | Kyle Bromley | Monroe CC | 155 |
| 2015 | Monroe CC | Zachary Leland | SUNY Adirondack | 149 |
| 2016 | Jamestown CC | Dante Migliore | Mohawk Valley CC | 148 |
| 2017 | Onondaga CC | Dante Migliore | Mohawk Valley CC | 144 |
| 2018 | SUNY Adirondack | Bobby Davenport | Mohawk Valley CC | 156 |
| 2019 | Niagara CCC | Ryan Mahardy | SUNY Adirondack | 158 |
| 2021 | Niagara CCC | Murphy Lang | Niagara CCC | 159 |
| 2022 | Niagara CCC | Sean Barrett | Niagara CCC | 150 |
| 2023 | Onondaga CC | Evan Crouse | Herkimer College | 151 |
| 2024 | SUNY Niagara | Brady Fye | Jamestown CC | 149 |
| 2025 | SUNY Niagara | Eliel Rodriguez | SUNY Niagara | 152 |
| 2026 | SUNY Niagara | Finn Graham | SUNY Niagara | 148 |
* The 2020 NJCAA Division III Golf season was cancelled due to the COVID-19 pandemic.